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The commentary on 2 Thessalonians 2:4 (that Antichrist "sitteth in the temple of God") of the very anti-Protestant Original Douay-Rheims Bible says:
St. Augustine therefore li. 20 de civit. c. 19 and St. Jerome q. 11 ad Algasiam. do think, that this sitting of Antichrist in the temple, doth signify his sitting in the Church of Christ, rather than in Solomon's temple. Not as though he should be a chief member of the Church of Christ, or a special part of his body mystical, and be Antichrist and yet withal continuing within the Church of Christ, as the Heretics feign, to make the Pope Antichrist (whereby they plainly confess and agnise [recognize] that the Pope is a member of the Church, & in ipso sinu Ecclesia, and in the very bosom of the Church, say they:) for that is ridiculous, that all Heretics whom St. John calleth Antichrists as his precursors, should go out of the Church, and the great Antichrist himself should be of the Church, and in the Church, and continue in the same. And yet to them that make the whole Church in revolt from God, this is no absurdity. But the truth is, that this Antichristian revolt here spoken of, is from the Catholic Church: and Antichrist, if he ever were of or in the Church, shall be an Apostate and a renegade out of the Church, and he shall usurp upon it by tyranny, and by challenging worship, religion, and government thereof, so that himself shall be adored in all the Churches of the world which he list to leave standing for his honor. And this is to sit in the temple or against the Temple of God, as some interpret. If any Pope did ever this, or shall do, then let the Adversaries call him Antichrist.
This passage makes it clear that a true pope cannot be Antichrist, but Antichrist could be an anti-pope, and anti-popes are not members of the Church.
Cardinal Manning, the most prominent father at the First Vatican Council who was responsible for the definition on papal infallibility, said in his Temporal Power of the Vicar of Christ 2nd part (4 lectures), "The Perpetual Conflict of the Vicar of Christ", pp. 81-173 (available in printed form from TradiBooks as The Pope and The Antichrist):
We have here [2 Thessalonians 2:3-11] a prophecy … of a [spiritual*] revolt, which shall precede the second coming of our Lord … The authority, then, from which the revolt is to take place is that of the kingdom of God on earth, prophesied by Daniel [cf. Daniel 2] as the kingdom which the God of heaven should set up … in other words, the one and universal Church, founded by our Divine Lord, and spread by His Apostles throughout the world. In this one only kingdom was deposited the true and supernatural pure theism, or knowledge of God, and the true and only faith of God incarnate, with the doctrines and laws of grace. This, then, is the authority from which the revolt is to be made, be that revolt what it may.
[*"St. Jerome, with some others, interprets this revolt to be the rebellion of the nations or provinces against the Roman Empire. … They have revolted, and no manifestation has appeared." Thus, the revolt is spiritual, not temporal.]
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Opening
I will start off with the Navarre Bible New Testament Compact Edition Explanatory Notes to the vv. 2:2, 2:3, and 2:7 in the Second Letter of Paul to the Thessalonians and then I will quote a great portion of the note to 2 Thes 2:1-12 from the same Bible, after which I will attempt to answer the 4 questions you have raised.
The Explanatory Notes
2:2: Paul warns against over eagerness to expect the Second Coming, and specific various signs to be looked for first.
2:3, the man of lawlessness: i.e., the Antichrist.
2:7: Evil will operate secretly till the final unmasking.
The note to 2 Thes 2:1-12
Against those who were misleading the Thessalonians by telling them that the Second Coming was imminent, St. Paul uses Old Testament images and symbols to assert that two things must happen first - "rebellion" or apostasy, and the appearance on the scene of the man of lawlessness" (v.3). Our LORD himself predicted this rebellion (cf. Mk 13:22); he said that when it had run its course, the End would come, and the last judgment. We do not know what the Apostle means by the "man of lawlessness" - maybe all the forces of evil taken together as a tool at the service of Satan, although the description of this adversay of God is very like that of the "Antichrist" pf St. John (cf. 1 Jn 2:18-22; cf. CCC 675). [...]
Next, stating the Church Teaching on Endtime events
From CCC 673-677, Colin B. Donovan, STL1 provides the following chronology of the general order of events the End as follows:
the full number of the Gentiles come into the Church
the "full inclusion of the Jews in the Messiah's salvation, in the wake of the full number of the Gentiles" (#2 will follow quickly on, in the wake of, #1)
a final trial of the Church "in the form of a religious deception offering men an apparent solution to their problems at the price of apostasy from the truth." The supreme deception is that of the Antichrist.
Christ's victory over this final unleashing of evil through a cosmic upheaval of this passing world and the Last Judgment.
1. cf. Endtimes, Millennium, Rapture | EWTN.
Answering
Q1. Has the "the apostasy" (ἡ ἀποστασία) already come? If so, what is it, and when did it occur?
A1. The Church has not made such a pronouncement and the apostasy is
a final trial of the Church "in the form of a religious deception offering men an apparent solution to their problems at the price of apostasy from the truth." The supreme deception is that of the Antichrist.
Q2. If not, what criteria would the Pope and magisterium use to identify the apostasy when it occurs?
A2. In the first place, the Magisterium of the Church is not something apart from the Pope, which can undertake the task of identifying something. It is an authority granted the successors of the apostles by the Holy Spirit, something the Pope and the bishops will use when discerning the truth.
That said, how would the Pope and the bishops identify the apostasy?
From CCC 675 and 676 (sans footnotes) under The Church's ultimate trial
675 Before Christ's second coming the Church must pass through a final trial that will shake the faith of many believers. The persecution that accompanies her pilgrimage on earth will unveil the "mystery of iniquity" in the form of a religious deception offering men an apparent solution to their problems at the price of apostasy from the truth. The supreme religious deception is that of the Antichrist, a pseudo-messianism by which man glorifies himself in place of God and of his Messiah come in the flesh.
676 The Antichrist's deception already begins to take shape in the world every time the claim is made to realize within history that messianic hope which can only be realized beyond history through the eschatological judgment. The Church has rejected even modified forms of this falsification of the kingdom to come under the name of millenarianism, especially the "intrinsically perverse" political form of a secular messianism.
Q3. Has "the man of sin, the son of perdition" (ὁ ἄνθρωπος τῆς ἁμαρτίας, ὁ υἱὸς τῆς ἀπωλείας) been revealed? If so, who is he, and when was he revealed?
A3. The Church has made no such pronouncement and he will be revealed just before Christ comes.1
Q4. If not, again, what criteria would the Pope and magisterium use to identify this individual when he is revealed?
A4. Other than what has been presented above, I believe none of us are equipped to say what criteria the Pope and the magisterium will use to identify this individual when he is revealed. From above, the deposit of faith has specific various signs to be looked for first. [cf. Prophesies of the Antichrist By Early Church Fathers]. Please note that the EWTN article states at the time it was written:
As Cardinal Ratzinger recently pointed out (in the context of the message of Fátima), we are not at the end of the world. In fact, the Second Coming (understood as the physical return of Christ) cannot occur until the full number of the Gentiles are converted, followed by "all Israel."
1. See also: Who is holding back the “secret power of lawlessness” (2 Th2:7)? | BH
Further reading: