Upvote:4
This should not cause a problem. The authorities ought to be well aware that travelers enter and exit the Schengen zone through various airports and catch connecting flights, so it's not at all unusual for a traveler from India to Hungary to arrive and depart elsewhere and not have any Hungarian stamps (indeed, it doesn't look like there are any direct flights from India to Budapest).
The length of your stay and the timing of your next visit could potentially be a concern though. It sounds like you spent the maximum 90 days in the Schengen area and are looking to take another trip almost as soon as you're allowed. Long repeated stays could cause more scrutiny of your situation, especially if this new trip is a lengthy one as well.