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tl;dr: There is no record of the Council of Nicaea defining the Canon of Scripture. It is not clear what Jerome meant.
The Catholic Encyclopedia's entry for the Book of Judith summarizes what we know, stating
St. Jerome, while rejecting in theory those books which he did not find in his Hebrew manuscript, yet consented to translate Judith because "the Synod of Nicaea is said to have accounted it as Sacred Scripture" (Praef. in Lib.). It is true that no such declaration is to be found in the Canons of Nicaea, and it is uncertain whether St. Jerome is referring to the use made of the book in the discussions of the council, or whether he was misled by some spurious canons attributed to that council.
This confirms as you well-observed that the 20 Canons of Nicaea(20 by some countings) do not define the extents of Scripture. Likewise, it is not contained in the Symbol. The Synodal Letter summarizing the acts of the council to the bishops of Egypt, Libya, and Cyrenaica does not mention it either. Together, these seem to indicate that the Council of Nicaea did not consider the matter.
We are left to speculate why Jerome stated that the Council accounted Judith as Scripute. One possiblity is that Jerome simply made it up. This is perhaps the least satisfying and does not seem to fit the evidence. Consider what he wrote in his preface to Judith:
Among the Jews, the book of Judith is considered among the apocrypha; its warrant for affirming those [apocryphal texts] which have come into dispute is deemed less than sufficient. Moreover, since it was written in the Chaldean [Old Aramaic] language, it is counted among the historical books. But since the Nicene Council is considered to have counted this book among the number of sacred Scriptures, I have acquiesced to your request (or should I say demand!): and, my other work set aside, from which I was forcibly restrained, I have given a single night's work , translating according to sense rather than verbatim. I have hacked away at the excessively error-ridden panoply of the many codices; I conveyed in Latin only what I could find expressed coherently in the Chaldean words. Receive the widow Judith, example of chastity, and with triumphant praise acclaim her with eternal public celebration. For not only for women, but even for men, she has been given as a model by the one who rewards her chastity, who has ascribed to her such virtue that she conquered the unconquered among humanity, and surmounted the insurmountable.
It seems that Jerome was neither fond of the book nor keen on translating it. Inventing a canon to create more work for himself sounds unlikely. It is also possible, as the CE points out, that Jerome was mistaken about the canons of Nicaea. While not impossible, there is no record of such a false canon. Others have suggested (an unfortunately I cant't remember where I first heard it) that Jerome was speaking of the fifty copyies of the Bible that Constantine ordered to be made. But this theory runs into two significant challenges. Constantine's commision is dated to 331, serveral years after the Council. Second, it is not clear if the Sacred Scriptures ordered by Constantine contained the entire Bible (including the Deuterocanon) or a subset, perhaps the New Testament or Gospels alone. As with the spurious canon, this suggestion is possible but not well supported by evidence.
The CE suggest one other possibility:
and it is uncertain whether St. Jerome is referring to the use made of the book in the discussions of the council
To me, this seems the most likely -- that one or more of the Nicaea Fathers used quotations from Judith to support an argument. To see my reasoning, consider what Jerome wrote in his Preface to Tobit.
I do not cease to wonder at the constancy of your demanding. For you demand that I bring a book written in Chaldean words into Latin writing, indeed the book of Tobias, which the Hebrews exclude from the catalogue of Divine Scriptures, being mindful of those things which they have titled Hagiographa. I have done enough for your desire, yet not by my study. For the studies of the Hebrews rebuke us and find fault with us, to translate this for the ears of Latins contrary to their canon. But it is better to be judging the opinion of the Pharisees to displease and to be subject to the commands of bishops. I have persisted as I have been able, and because the language of the Chaldeans is close to Hebrew speech, finding a speaker very skilled in both languages, I took to the work of one day, and whatever he expressed to me in Hebrew words, this, with a summoned scribe, I have set forth in Latin words. I will be paid the price of this work by your prayers, when, by your grace, I will have learned what you request to have been completed by me was worthy.
As with Judith, Jerome does not seem overly thrilled with translating Tobit. Unlike Judith, he agrees to do it because he finds it better to submit to bishops than Pharisees rather than pointing to a canon from Nicaea. While it is possible that a Nicaea set a canon including Judith but excluding Tobit, but that seems unlikely. More likely, some argument during the council used Judith, but Tobit was not relevent at any point. If I might be allowed to continue to speculate, note that the subject of clerical celibacy was discussed. (See also Canon III). Given what Jerome wrote about Judith:
Receive the widow Judith, example of chastity, and with triumphant praise acclaim her with eternal public celebration. For not only for women, but even for men, she has been given as a model by the one who rewards her chastity, who has ascribed to her such virtue that she conquered the unconquered among humanity, and surmounted the insurmountable.
Perhaps the Book of Judith came up in this matter.
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The records from the Nicene Council that survived to the modern day make no mention of setting a canon.
Jerome's preface to Judith, less than 100 years after the council, says that the Nicene Council included Judith (one of the Deuterocanon) among the Sacred Scriptures.
Jerome's Preface to Judith
Among the Hebrews the Book of Judith is found among the Hagiographa, the authority of which toward confirming those which have come into contention is judged less appropriate. [...] But because this book is found by the Nicene Council to have been counted among the number of the Sacred Scriptures, I have acquiesced to your request...
We don't know what Jerome meant by this - doubtlessly there are works and records that existed in Jerome's day that haven't survived to the present day. bradimus' answer gives some good speculation about possibilities here.
Around 900 AD, the Synodicon Vetus was written. This anonymous, psuedo-historical book contains information on synods and ecumenical councils up through the year 887 AD.
On the Council of Nicea, it says that the canon was determined by placing the books on the altar, and after prayer to God the inspired works were found on top.
The Synodicon Vetus [English Translation], chapter 35 (page 29)
The divine and sacred First Ecumenical Council of three hundred and eighteen God-inspired fathers was convened at Nicaea, metropolis of the province of Bithynia. Its presiding leaders were the presbyters Vito and Vicentius taking the place of Rome's Pope Sylvester and his successor Julius, Alexander of Alexandria, Macarius of Jerusalem, Eustathius of Antioch, the presbyter Alexander representing Metrophanes of Constantinople, Hosius the bishop of Cordoba, and Constantine the apostle among Christian emperors. This holy council attached the term "consubstantial" to the Holy Trinity, fixed the time of the divine and mystical Passover, and set forth the divinely inspired teaching of the Creed against all heretics, Arius, Sabellius, Photinus, Paul of Samosata, Manes, Valentinus, Marcion, and their followers. It condemned also Meletius of Thebais, along with those ordained by him, and Eusebius of Nicomedia. The canonical and apocryphal books it distinguished in the following manner: in the house of God the books were placed down by the holy altar; then the council asked the Lord in prayer that the inspired works be found on top and--as in fact happened--the spurious on the bottom.
There are many details only recorded in this book that scholars find spurious, as well as some councils or synods recorded that scholars suspect never happened. This gives credence to doubt the above account of the canon being determined at the Council of Nicea.
Voltaire popularized the story from the Synodicon Vetus around ~1764 AD.
Voltaire's Philosophical Dictionary, Councils, Section III
We have already said, that in the supplement to the Council of Nice it is related that the fathers, being much perplexed to find out which were the authentic and which the apocryphal books of the Old and the New Testament, laid them all upon an altar, and the books which they were to reject fell to the ground.
For legends that the Council of Nicea voted on the canon, the only source I can find that popularized that idea is from Thomas Paine ~1794 AD, though he does not mention the council by name.
Thomas Paine's Age of Reason, Part First, Section 4
Be this as it may, they decided by vote which of the books out of the collection they had made should be the WORD OF GOD, and which should not. They rejected several; they voted others to be doubtful, such as the books called the Apocrypha; and those books which had a majority of votes, were voted to be the word of God. Had they voted otherwise, all the people, since calling themselves Christians, had believed otherwise — for the belief of the one comes from the vote of the other. Who the people were that did all this, we know nothing of; they called themselves by the general name of the Church, and this is all we know of the matter.
In the 1800s, radical Christian Robert Taylor again brought up the Synodicon's theory.
Robert Taylor (~1829), in The diegesis, Appendix, page 432
A.D. 327. Grand Council of Nice in Bythinia, under the presidency of Constantine the Great, gave us the God of God creed used in the communion service. Pappus, in his Synodicon to the council of Nice, asserts, that having promiscuously put all the books under the communion table in a church, they besought the Lord, that the inspired records might get upon the table, while the spurious ones remained underneath, which accordingly happened.
And finally in the modern era, Dan Brown's fictional story implied that Constantine basically chose the canon of the Bible, either at or around the time of the Council of Nicaea.
Dan Brown's fictional Da Vinci Code (~2003 AD)
Constantine needed to strengthen the new Christian tradition, and held a famous ecumenical gathering known as the Council of Nicaea. At this gathering [...] many aspects of Christianity were debated and voted upon – the date of Easter, the role of bishops, the administration of sacraments, and, of course, the divinity of Jesus...
From this sprang the most profound moment in Christian history. Constantine commissioned and financed a new Bible, which omitted those gospels that spoke of Christ's human traits and embellished those gospels that made him Godlike. The earlier gospels were outlawed, gathered up, and burned.